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MVCL-DTI: Predicting Drug−Target Interactions Using a Multiview Contrastive Learning Model on a Heterogeneous Graph
Journal of Chemical Information and Modeling
2025-01-15 GitHub PDF
Bei Zhang, Lijun Quan, Zhijun Zhang, Lexin Cao, Qiufeng Chen, Liangchen Peng et al.
DS-MVP: identifying disease-specific pathogenicity of missense variants by pre-training representation
Briefings in Bioinformatics
2025-03-24 GitHub PDF
Qiufeng Chen, Lijun Quan, Lexin Cao, Bei Zhang, Zhijun Zhang, Liangchen Peng et al.
AffiGrapher: Contrastive Heterogeneous Graph Learning with Aromatic Virtual Nodes for RNA-Small Molecule Binding Affinity Prediction
Journal of Chemical Information and Modeling
2025-06-26 GitHub PDF
Junkai Wang, Jian Wu, Zhijun Zhang, Yelu Jiang, Liangchen Peng, Bei Zhang et al.
Prediction of pathogenic mutations in human transmembrane proteins and their associated diseases via utilizing pre-trained Bio-LLMs
Communications Biology
2025-07-15 GitHub PDF
Lexin Cao, Lijun Quan, Qiufeng Chen, Bei Zhang, Zhijun Zhang, Liangchen Peng et al.
LABind: identifying protein binding ligand-aware sites via learning interactions between ligand and protein
Nature Communications
2025-08-19 GitHub PDF
Zhang Zhijun, Quan Lijun, Wang Junkai, Peng Liangchen, Chen Qiufeng, Zhang Bei et al.